In silico pharmacological study of lacourtianal, a new terpenoid isolated from the stem bark of Chrysophyllum lacourtianum De Wild (Sapotaceae) against Alzheimer's disease
Abstract
Urgent need to treat, prevent, delay the onset, slow the progression and reduce the symptoms of Alzheimer's disease (AD) is dictated by the growing number of people affected by the disease. This research requires an in silico approach. The aim of this work was to carry out an in silico pharmacological study of lacourtianal, a new terpenoid against Alzheimer's disease. The structure of lacourtianal and reference drugs were drawn on chemdraw 2D. Energy minimization was performed using the molecular mechanics force field (MM2) and saved in the PDB using chemdraw 3D. The compound's Smiles format was entered into the pk-CSM web servers for ADME/Tox parameter prediction. Conformational site analysis and docking parameters such as binding energy, interaction profiles with AD target residues (AchE, BuchE, β-secretase and GSK-3β) were determined using AutoDock 4.2 and Discovery Studio visualizer. Lacourtianal is a valuable oral drug candidate. It crosses the Blood-brain barrier (BBB) and shows considerable docking scores for AD targets. These scores were higher for BuchE and β-secretase compared with reference compounds. It binds to residues Phe297, Phe 338 and Tyr31, Trp286 in the acyl pocket and peripheral site of AchE, respectively. Importantly, it establishes low-energy interactions (hydrogen and pi) with the His438 residue of the Butyrylcholinesterase catalytic triad. It also establishes favorable interactions with residues Tyr71 and Tyr216, which are residues controlling substrate accessibility to the active site of the BACE1 and GSK 3β enzymes respectively. These results show that lacourtianal has promising therapeutic potential for the treatment of Alzheimer's disease.
Keywords: Lacourtianal, in silico, AchE, BuchE, β-secretase, GSK-3β and AD
Keywords:
Lacourtianal, in silico, AchE, BuchE, β-secretase, GSK-3β, ADDOI
https://doi.org/10.22270/jddt.v13i12.6322References
Cummings J, Lee G, Nahed P, Kambar MEZN, Zhong K, Fonseca J, et al. Alzheimer's disease drug development pipeline: 2022. Alzheimers Dement (N Y). 2022;8(1):e12295. https://doi.org/10.1002/trc2.12295 PMid:35516416 PMCid:PMC9066743
Qiu C, Kivipelto M, von Strauss E. Epidemiology of Alzheimer's disease: occurrence, determinants, and strategies toward intervention. Dialogues Clin Neurosci. 2009;11(2):111-28. https://doi.org/10.31887/DCNS.2009.11.2/cqiu PMid:19585947 PMCid:PMC3181909
Tanner CM, Goldman SM, Ross GW, Grate SJ. The disease intersection of susceptibility and exposure: chemical exposures and neurodegenerative disease risk. Alzheimers Dement. 2014 Jun;10(3 Suppl):S213-225. https://doi.org/10.1016/j.jalz.2014.04.014 PMid:24924672
Jadhav S, Avila J, Schöll M, Kovacs GG, Kövari E, Skrabana R, et al. A walk through tau therapeutic strategies. Acta Neuropathol Commun. 2019 Feb 15;7(1):22. https://doi.org/10.1186/s40478-019-0664-z PMid:30767766 PMCid:PMC6376692
Cummings J, Zhou Y, Lee G, Zhong K, Fonseca J, Cheng F. Alzheimer's disease drug development pipeline: 2023. Alzheimers Dement (N Y). 2023;9(2):e12385. https://doi.org/10.1002/trc2.12385 PMid:37251912 PMCid:PMC10210334
Rahman A, Hossen MA, Chowdhury MFI, Bari S, Tamanna N, Sultana SS, et al. Aducanumab for the treatment of Alzheimer's disease: a systematic review. Psychogeriatrics. 2023 May;23(3):512-22. https://doi.org/10.1111/psyg.12944 PMid:36775284
Retinasamy T, Shaikh MohdF. Aducanumab for Alzheimer's Disease: An Update. Neuroscience Research Notes. 2021 Jun 30;4. https://doi.org/10.31117/neuroscirn.v4i2.81
Ibrahim MM, Gabr MT. Multitarget therapeutic strategies for Alzheimer's disease. Neural Regen Res. 2019;14(3):437-40. Available from: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6334608/ https://doi.org/10.4103/1673-5374.245463 PMid:30539809 PMCid:PMC6334608
Obaid RJ, Naeem N, Mughal EU, Al-Rooqi MM, Sadiq A, Jassas RS, et al. Inhibitory potential of nitrogen, oxygen and sulfur containing heterocyclic scaffolds against acetylcholinesterase and butyrylcholinesterase. RSC Advances. 2022;12(31):19764. Available from: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9275557/ https://doi.org/10.1039/D2RA03081K PMid:35919585 PMCid:PMC9275557
Shaker B, Ahmad S, Lee J, Jung C, Na D. In silico methods and tools for drug discovery. Computers in Biology and Medicine. 2021;137:104851. Available from: https://www.sciencedirect.com/science/article/pii/S0010482521006454 https://doi.org/10.1016/j.compbiomed.2021.104851 PMid:34520990
Montenegro ZJS, Álvarez-Rivera G, Sánchez-Martínez JD, Gallego R, Valdés A, Bueno M, et al. Neuroprotective Effect of Terpenoids Recovered from Olive Oil By-Products. Foods. 2021;10(7). Available from: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8306477/ https://doi.org/10.3390/foods10071507 PMid:34209864 PMCid:PMC8306477
Mangoua Talla R, Jouda JB, Tegasne C, Happi G, Kapche W, Lenta B, et al. One new constituent from the stem bark of Chrysophyllum lacourtianum De Wild. (Sapotaceae). Natural Product Research. 2021 Oct 5;
Pires DEV, Blundell TL, Ascher DB. pkCSM: Predicting Small-Molecule Pharmacokinetic and Toxicity Properties Using Graph-Based Signatures. J Med Chem. 2015 May 14;58(9):4066-72. https://doi.org/10.1021/acs.jmedchem.5b00104 PMid:25860834 PMCid:PMC4434528
Kuppusamy A, Arumugam M, George S. Combining in silico and in vitro approaches to evaluate the acetylcholinesterase inhibitory profile of some commercially available flavonoids in the management of Alzheimer's disease. Int J Biol Macromol. 2017 Feb;95:199-203. https://doi.org/10.1016/j.ijbiomac.2016.11.062 PMid:27871793
Konc J, Konc JT, Penca M, Janežič D. Binding-sites Prediction Assisting Protein-protein Docking. Acta Chim Slov. 2011 Sep;58(3):396-401.
Madeswaran A, Umamaheswari M, Asokkumar K, Sivashanmugam T, Subhadradevi V, Jagannath P. Computational drug discovery of potential phosphodiesterase inhibitors using in silico studies. 2012; https://doi.org/10.3329/bjp.v7i1.10007
Goodsell DS, Morris GM, Olson AJ. Automated docking of flexible ligands: Applications of AutoDock. Journal of molecular recognition : JM. 1996;9(1):1-5. Available from: https://www.researchwithnj.com/en/publications/automated-docking-of-flexible-ligands-applications-of-autodock https://doi.org/10.1002/(SICI)1099-1352(199601)9:1<1::AID-JMR241>3.0.CO;2-6
Cummings J, Lee G, Nahed P, Kambar MEZN, Zhong K, Fonseca J, et al. Alzheimer's disease drug development pipeline: 2022. Alzheimer's & Dementia: Translational Research & Clinical Interventions. 2022;8(1):e12295. Available from: https://onlinelibrary.wiley.com/doi/abs/10.1002/trc2.12295 https://doi.org/10.1002/trc2.12295 PMid:35516416 PMCid:PMC9066743
Reichel A, Lienau P. Pharmacokinetics in Drug Discovery: An Exposure-Centred Approach to Optimising and Predicting Drug Efficacy and Safety. Handb Exp Pharmacol. 2016;232:235-60. https://doi.org/10.1007/164_2015_26 PMid:26330260
Suárez Montenegro ZJ, Álvarez-Rivera G, Sánchez-Martínez JD, Gallego R, Valdés A, Bueno M, et al. Neuroprotective Effect of Terpenoids Recovered from Olive Oil By-Products. Foods. 2021 Jun 29;10(7):1507. https://doi.org/10.3390/foods10071507 PMid:34209864 PMCid:PMC8306477
Banks WA. Characteristics of compounds that cross the blood-brain barrier. BMC Neurology. 2009;9(1):S3. https://doi.org/10.1186/1471-2377-9-S1-S3 PMid:19534732 PMCid:PMC2697631
Panigrahy SK, Jha A, Bhatt R, Kumar A. Molecular docking and ADMET-based mining of terpenoids against targets of type-II diabetes. Netw Model Anal Health Inform Bioinforma. 202;9(1):21. https://doi.org/10.1007/s13721-020-00229-8 23. Spronk SA, Carlson HA. The Role of Tyrosine 71 in Modulating the Flap Conformations of BACE1. Proteins. 2011;79(7):2247-59. Available from: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3577374/ https://doi.org/10.1002/prot.23050 PMid:21590744 PMCid:PMC3577374
Chauhan N, Paliwal S, Jain S, Verma K, Paliwal S, Sharma S. GSK-3β and its Inhibitors in Alzheimer's Disease: A Recent Update. Mini Rev Med Chem. 2022;22(22):2881-95. https://doi.org/10.2174/1389557522666220420094317 PMid:35450523
Hashweh NN, Bartochowski Z, Khoury R, Grossberg GT. An evaluation of hydromethylthionine as a treatment option for Alzheimer's disease. Expert Opinion on Pharmacotherapy [Internet]. 2020;21(6):619-27. https://doi.org/10.1080/14656566.2020.1719066 PMid:32037892
Krishnankutty A, Kimura T, Saito T, Aoyagi K, Asada A, Takahashi SI, et al. In vivo regulation of glycogen synthase kinase 3β activity in neurons and brains. Sci Rep [Internet]. 2017;7(1):8602. Available from: https://www.nature.com/articles/s41598-017-09239-5 https://doi.org/10.1038/s41598-017-09239-5 PMid:28819213 PMCid:PMC5561119
Published



How to Cite
Issue
Section
Authors who publish with this journal agree to the following terms:
- Authors retain copyright and grant the journal right of first publication with the work simultaneously licensed under a Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0). that allows others to share the work with an acknowledgment of the work's authorship and initial publication in this journal.
- Authors are able to enter into separate, additional contractual arrangements for the non-exclusive distribution of the journal's published version of the work (e.g., post it to an institutional repository or publish it in a book), with an acknowledgment of its initial publication in this journal.
- Authors are permitted and encouraged to post their work online (e.g., in institutional repositories or on their website) prior to and during the submission process, as it can lead to productive exchanges, as well as earlier and greater citation of published work (See The Effect of Open Access).