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Journal of Drug Delivery and Therapeutics
Open Access to Pharmaceutical and Medical Research
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Open Access Full Text Article Research Article
2D QSAR of Novel hybrid motifs of 4-nitroimidazole-piperazinyl tagged 1,2,3-triazoles for Anti-cancer Activity against Breast Cancer cell line MCF-7
Pranay Raikwar 1, Arun Kumar Rai 2*, Shabnam Yadav 1, Nitin Singh Rajput 1, Shivraj Pandey 1, Megha Mishra 1, Pradeep Kumar Singour 1
1 Department of Pharmaceutical Chemistry, VNS Group of Institutions- Faculty of Pharmacy, Neelbud, Bhopal (M.P.) 462044.
2 Department of Pharmaceutical Chemistry, Corporate Institute of PharmacyPatel Nagar Raisen Road Bhopal, Madhya Pradesh, India (462022)
|
Article Info: _______________________________________________ Article History: Received 17 Jan 2026 Reviewed 25 Feb 2026 Accepted 18 March 2026 Published 15 April 2026 _______________________________________________ Cite this article as: Raikwar P, Rai AK, Yadav S, Rajput NS, Pandey S, Mishra M, Singour PK, 2D QSAR of Novel hybrid motifs of 4-nitroimidazole-piperazinyl tagged 1,2,3-triazoles for Anti-cancer Activity against Breast Cancer cell line MCF-7, Journal of Drug Delivery and Therapeutics. 2026; 16(4):109-119 DOI: http://dx.doi.org/10.22270/jddt.v16i4.7662 _______________________________________________ For Correspondence: Arun Kumar Arun, Assistant Professor, Department of Pharmaceutical Chemistry, Corporate Institute of Pharmacy, Patel Nagar Raisen Road Bhopal, Madhya Pradesh, India (462022) |
Abstract _______________________________________________________________________________________________________________ Objective: To develop and validate a two‑dimensional quantitative structure–activity relationship (2D‑QSAR) model for novel 4‑nitroimidazole‑piperazinyl tagged 1,2,3‑triazole derivatives and to identify key physicochemical descriptors governing their anticancer activity against the human breast cancer cell line MCF‑7. Results and Discussion: Several statistically acceptable QSAR models were obtained; among them, Model 1, incorporating Molar Refractivity, partition coefficient, Henry’s law constant, mass, and molecular weight, showed the most favorable balance of correlation and error (r ≈ 0.45, r² ≈ 0.20, standard deviation ≈ 0.50) with a single outlier. Descriptor analysis indicated that Molar Refractivity is positively correlated with MCF‑7 inhibitory activity, suggesting that bulkier or more polarizable substituents enhance cytotoxic potency, while the partition coefficient term supports a beneficial role of less polar, more lipophilic groups. The results demonstrate that the thermodynamic and electronic nature of substituents strongly influences activity and that even a moderate‑fit 2D‑QSAR model can serve as a useful predictive tool for prioritizing new analogues. Conclusion: The 2D‑QSAR study established that MCF‑7 cell inhibitory activity of 4‑nitroimidazole‑piperazinyl tagged 1,2,3‑triazole derivatives is primarily governed by Molar Refractivity, lipophilicity‑related parameters, and other thermodynamic–electronic descriptors of the substituents. The optimized Model 1 provides a rational basis for designing new hybrids with higher molecular refractivity and appropriately tuned hydrophobic and electronic profiles to achieve improved anticancer potency, and the proposed QSAR framework can be applied to further scaffold optimization against breast cancer targets. Keywords: Quantitative Structure Activity Relationship (QSAR), Anti-Cancer,imidazole, ChemDraw, MCF-7 Cell. |
INTRODUCTION:
Cancer is a perplexing and terrifying illness, or group of illnesses. For over 200 million years, multicellular organisms have suffered from cancer; evidence of cancer in contemporary humans' progenitors dates back more than a million years. In contrast to many environmental disorders, parasites, and infectious diseases, cancer is not largely brought on by an outside force. Human cells that have, in a sense, lost control and been recruited and partially changed into pathogenic organisms or the building blocks of tumors are its agents of destruction. In Explaining Cancer (2018), Anya Plutynski states “Cancer can be compared to a car breaking down, an infectious disease, a process of natural selection, a process of development, or even the expansion of an ecological community”1,2.
One kind of cancer that manifests differently in women is breast cancer (BC)3. The United States reported 268,670 new cases of BC in 2018. Worldwide, BC is a prevalent malignancy that impacts women4. BC may be divided into three types based on molecular and histological evidence: BC expressing human epidermal receptor 2 (HER2+), BC expressing hormone receptors (estrogen receptor (ER+) or progesterone receptor (PR+)), and triple-negative breast cancer (TNBC).The BC molecular features should serve as the foundation for the therapeutic strategies. Furthermore, the TNBC was classified into six groups: immunomodulatory (IM), basal-like 1 (BL-1), basal-like 2 (BL-2), mesenchymal (M), mesenchymal stem cell-like (MSL), and luminal androgen receptor (LAR)5. It's unclear exactly how breast cancer begins6,7. The most common type of BC, BC expressing HR, accounts for 60–70% of BC occurrences in affluent nations and only affects premenopausal women. Consequently, the most popular therapeutic strategy is hormonotherapy8.
In India, breast cancer has surpassed cervical cancer as the leading cause of cancer-related deaths among women. Researchers throughout the world are under pressure to create new therapies more quickly due to the rising incidence of breast cancer and the emergence of drug resistance to current anticancer medications9-11. The structure-based drug designing technique, which has emerged as a potent tool to improve the drug discovery processes, can be used to meet this demand in lead identification and optimization12. Additionally, a number of researchers investigated the potential of plant compounds like resveratrol, isoflavones, and indoles against cancer.
The development of contemporary medications for the treatment of cancer is greatly aided by the use of natural plant products. In light of this, maslinic acid, a member of the class of triterpenes (oleananes), was the subject of a thorough structure-activity connection investigation13. It is one of the significant anticancer drugs for which no three-dimensional quantitative structure–activity relationship (3D-QSAR) analysis has yet been published in order to identify the major structural regulating areas and various active and inactive locations14. In order to identify the critical regulatory elements governing the toxicity and anticancer activity of maslinic acid, a 3D-QSAR research was conducted on this natural series. A common pharmacophore was created because there is currently no structural information available for maslinic acid in its target-bound state15.
This creates a pharmacophore template that mimics the bioactive conformation by using the molecular field-based similarity technique for the conformational search. To gain a deeper understanding of the structure-activity relationship (SAR), activity-atlas models were also created16. The active compounds' positive and negative electrostatic areas were also made visible using 2D-QSAR. As a result, more potent and effective maslinic acid analogs were created. This 2D-QSAR method had a distinct effect and was a useful predictive tool, mostly in pharmaceutical design.Nevertheless, obtaining a high-quality 3D-QSAR is a difficult undertaking. This is because accurate alignments for every compound with the least amount of noise are required, as well as high-quality and trustworthy biological data17,18.
Although the male adrenal cortex can manufacture estrogen, estrogen hormone is a steroid molecule that performs important modulatory roles in physiological processes, particularly in females19,20. The ovaries and placenta cells are the primary sources of estrogen, which is produced through the interaction and activation of the estrogen receptors ER α and ERβ, which belong to the nuclear receptor superfamily of transcription factors and have highly conserved DNA- and ligand-binding domains21–24. The female reproductive tract, breast, liver, bone, brain, skin, colon, and salivary gland are among the various tissues that contain estrogen receptors25–27. Consequently, ER α controls a number of intricate physiological functions in humans.
However, through estrogen signaling, ER contributes to the development of cancers. Tumor surface ER α protein has the ability to bind to estrogen (17b-estradiol, E2) and subsequently contribute to the development of cancers through estrogen signaling. Consequently, the hormone-responsive genes that support DNA synthesis and cell division are activated19. The reproductive system (endometriosis, breast, ovarian, and prostate cancer), bone, lung cancer, cardiovascular disease, gastrointestinal disease, urogenital tract disease, neurodegenerative disorders, and cutaneous melanoma are among the tumors where this promotes the growth and spread of cancer cells24. Compared to 10% in healthy tissues, ER α is overextended in 50–80% of breast cancer tissues. Consequently, it has been determined that estrogen has a major role in the development of ER α positive breast cancer, which accounts for approximately 70–80% of all cases of breast cancer28-30. As a selective estrogen receptor modulator (SERM), 4-hydroxytamoxifen (4-OHT) increases the growth rate of the human breast cancer cell line MCF-7 in response to estrogens and decreases it in response to antiestrogens31. demonstrates the function of ERs in the various cancer cell types employed in this investigation. While the involvement of ERβ is still debatable, it can be observed that Er α α has promising roles in the development of breast cancer.
Conversely, ER and ERβ have a major impact on prostate cancer, with ER α using tumor growth-promoting actions and ERβ using tumor growth-suppressive effects24,36,37. By lowering fibrosis and immune response, ERβ inhibits the development of liver cancer. The role of ER carcinoma cells in the liver when ER α α is still debatable and encourages hepatocellular proliferation cooperates with ERβ.
Among the most significant organic compounds that are commonly found in molecules of interest in medicinal chemistry are heterocyclic compounds44 and heterocyclic scaffolds45. Additionally, heterocycles that include nitrogen are crucial to life science because they exhibit a variety of biological functions, including representative alkaloids and other nitrogen. Serotonin46, thiamine, popularly known as vitamin B147, atropine48, the infamous morphine49, and the majority of vitamins, nucleic acid, enzymes, co-enzymes, hormones, and alkaloids all contain N-based heterocycles as scaffolds.
These facts reveal and highlight the critical importance of heterocycles in contemporary drug design and drug discovery. Nitrogen heterocyclic molecules have always been appealing candidates to synthetic organic chemists due to their various biological activities.
A well-known idea in drug design and research, molecular hybridization of heterocyclic motifs relies on the combination of pharmacophoric moieties of several bioactive compounds. When compared to the parent medications, they create a new hybrid system with better activities50.
One of the most thoroughly researched substances in both the natural and synthetic worlds are those that contain nitroimidazole51–53. Because of its many biological and pharmacological characteristics, imidazoles have garnered a lot of attention recently54,55. In addition to their clinically demonstrated anticoagulant and antithrombotic properties, several triazoles have demonstrated antibacterial and anticancer properties56,57. This technique may also produce molecules with altered selectivity profiles, distinct or multiple modes of action, and less undesirable side effects.
A number of structural modification techniques have been used to rationally plan new synthetic prototypes with the goal of creating new compounds with optimized pharmacodynamic and pharmacokinetic properties. These techniques include investigating the fragments of bioactive substances (Fragment-Based Drug Design)58, active metabolites of drugs59, bioisosterism60, selective optimization of drug side effects61, and drug latentiation.
Because of their broad pharmacological profiles, which include antibacterial64,65 and anticancer 66,67 properties, and their easy synthesis using click chemistry62,63, 1,2,3-triazoles have a significant position in drug discovery. Potential structural characteristics of bioactive triazoles include their excellent selectivity, stability against metabolic degradation, and hydrogen bonding capacity, which may be advantageous when binding biomolecular targets68. It has been shown that various kinds of chemical bridges at the C-4 of the 1,2,3-triazole core remove planarity, which may improve drug-ability and make it easier for molecules to attach to potential receptors by induced fit.
Our team has been synthesizing several derivatives of novel 5-substituted piperazinyl-4-nitroimidazole derivatives and assessing their anti-HIV efficacy for the past fifteen years69-71. Because they circulate freely throughout the body and are irreversibly bound by nucleophilic covalent binding to proteins in low oxygen settings, nitroimidazoles are a popular class of compounds that have been thoroughly explored as molecular probes72. 4-Derivatives of nitroimidazoles have been investigated as radiopharmaceuticals for tumor hypoxia probe, therapeutic therapy, antifertility potential, and anti-tubercular profile73,74. The synthesis of the highly effective hybridization system that our group reported has been the subject of other investigations75.
MATERIAL AND METHODS:
The Novel hybrid motifs of 4-nitroimidazole-piperazinyl tagged 1,2,3-triazoles derivatives chemicals produced by were the materials employed in this investigation. In Table 1, the dependent variable was the Inhibition Concentration (IC50)76.
Table 1: Structure and biological activity of 4-nitroimidazole-piperazinyl tagged 1,2,3-triazoles
|
S. No. |
Compounds |
Substitution R |
MCF-7 Cell Actual IC50 (µM) |
Biological Activity |
|
1. |
COMPOUND 2 |
- |
0.068 |
7.167491087 |
|
2. |
COMPOUND 3 |
- |
4.2 |
5.37675071 |
|
3.* |
COMPOUND 4 |
- |
0.085 |
7.070581074 |
|
4. |
COMPOUND 5 |
-- |
0.084 |
7.075720714 |
|
5. |
COMPOUND 9a |
H |
0.055 |
7.259637311 |
|
6. |
COMPOUND 9b |
p-Br |
0.079 |
7.102372909 |
|
7. |
COMPOUND 9c |
p-F |
0.024 |
7.619788758 |
|
8. |
COMPOUND 9d |
m-NO2 |
0.04 |
7.397940009 |
|
9. |
COMPOUND 9e |
m-Me |
0.079 |
7.102372909 |
|
10. |
COMPOUND 9f |
m—Br |
0.053 |
7.27572413 |
|
11. |
COMPOUND 9g |
m-F |
0.002 |
8.698970004 |
|
12. |
COMPOUND 9h |
o-NO2 |
0.048 |
7.318758763 |
|
13.* |
COMPOUND 9i |
o-Br |
0.106 |
6.974694135 |
|
14. |
COMPOUND 9j |
o-F |
0.151 |
6.821023053 |
|
15. |
COMPOUND 9k |
p-Me |
0.005 |
8.301029996 |
|
16. |
COMPOUND 10a |
H |
0.112 |
6.950781977 |
|
17. |
COMPOUND 10b |
p-Br |
0.372 |
6.42945706 |
|
18. |
COMPOUND 10c |
m-OME |
0.585 |
6.232844134 |
|
19. |
COMPOUND 11a |
p-Br |
2.12 |
5.673664139 |
|
20. |
COMPOUND 11b |
o-SMe |
0.136 |
6.866461092 |
|
21.* |
COMPOUND 11c |
o-OEt |
0.399 |
6.399027104 |
|
22. |
COMPOUND 11d |
H |
0.312 |
6.879426069 |
|
23. |
COMPOUND 11e |
p-Me |
0.219 |
6.659555885 |
|
24. |
COMPOUND 11f |
p-Ome |
0.251 |
6.600326279 |
|
25. |
COMPOUND 11g |
o-Me |
0.183 |
6.73754891 |
|
26. |
COMPOUND 11h |
o-Et |
0.088 |
7.055517328 |
|
27.* |
COMPOUND 11i |
o-NO2 |
0.185 |
6.732828272 |
|
28. |
COMPOUND 11j |
p-Cl |
0.279 |
6.554395797 |
|
29. |
COMPOUND 11k |
P-NO2 |
0.671 |
6.17327748 |
|
30. |
COMPOUND 11l |
m-OMe |
0.198 |
6.70333481 |
|
31. |
COMPOUND 11m |
m-Me |
0.161 |
6.793174124 |
|
32. |
COMPOUND 11n |
m-Cl |
0.155 |
6.809668302 |
|
33. |
COMPOUND 11o |
Tetralin |
0.131 |
6.882728704 |
|
34. |
COMPOUND 11p |
Benzdioxole |
0.052 |
7.283996656 |
|
35. |
COMPOUND 11q |
Naphthalene |
0.27 |
6.568636236 |
* test set compounds
Instrumentation:
An Asus laptop with an Intel® Core i5 processor, 8GB of RAM, and a 500GB SDD was utilized in this study. The package Chemoffice application Version 16.0 for Windows was used to calculate all of the compounds' physiochemical parameters (Table 1), and the semi-empirical Chem3D was used to finish geometry optimization. The statistical application Valstat version 16 for Windows was then used for analysis.
Data Set:
The physicochemical properties of novel hybrid motifs of 4-nitroimidazole-piperazinyl tagged 1,2,3-triazole derivatives were linked to their inhibitory action using QSAR analysis. The data series were taken from a study released by Sadeekah O.W. Saber et. al., 2023 There are 35 in the selected series. The structure and diversity of activities in both sets are thereby maintained for the purpose of creating QSAR models. The biological activities were expressed using the inhibitory concentration (IC50) in micromolar concentrations. For correlational purposes, the indicated IC50 values were first converted to their molar units and then to the free energy-related negative logarithmic state, or Log (1/IC50) or pIC50.
Descriptors calculation
Five steps are involved in the development of the QSAR model. The first step consists of determining the series of pyrazole-benzimidazole compounds to be studied and the IC50 value found in the lab experiment. The second stage is to select a set of descriptors that are likely related to the biological activity of interest in order to optimize for the most stable skeleton structure of the series of pyrazole-benzimidazole compounds. The next step is to compute descriptors using the optimized structure. In the fourth step, a mathematical equation model representing the relationship between the biological activity and the chosen descriptors is created using statistical analysis with VALSTAT Software for Windows. Validating the QSAR models is the final stage.
All of the pyrazole-benzimidazole derivative structures were displayed using Chem Draw 16.0. The molecular mechanics (MM2) technique was used to look for lower energy conformations in each molecule. Molecular orbital property accompanying name (MOPAC) was used to reoptimize the compounds with the lowest energy. To avoid the compounds' local stable conformations, the geometry of each molecule was optimized utilizing a range of starting points. When determining the molecular descriptors, the conformation with the lowest energy was considered77. The QSAR study's thermodynamic, electronic, steric, and molecular descriptors were computed using ChemOffice 2001 displayed in Table 2.
Table 2: Descriptors for training and test set compounds of series
|
S.NO |
Henry's Law Constant |
Mol Refractivity |
Exact Mass |
Mass |
Mol Weight |
Partition Coefficient |
LogP |
LogS |
PKa |
|
1 |
4.149 |
5.957299709 |
217.0851266 |
217.228 |
217.228 |
1.651100039 |
2.60282 |
-3.36199 |
0 |
|
2 |
4.149 |
6.73429966 |
294.9956392 |
296.124 |
296.124 |
2.326448202 |
3.39452 |
-4.1582 |
0 |
|
3 |
4.149 |
9.013700485 |
317.185175 |
317.393 |
317.393 |
3.054520607 |
3.5992 |
-4.48971 |
9.03019 |
|
4 |
4.149 |
10.20230103 |
355.2008251 |
355.442 |
355.442 |
4.067719936 |
4.12525 |
-4.82478 |
7.65804 |
|
5 |
4.149 |
13.97099972 |
488.2648223 |
488.596 |
488.596 |
4.600320339 |
5.16512 |
-7.05665 |
7.54281 |
|
6 |
4.149 |
14.74800014 |
566.1753349 |
567.492 |
567.492 |
5.463320732 |
5.96058 |
-7.8762 |
7.54152 |
|
7 |
4.149 |
13.98649979 |
506.2554005 |
506.5864032 |
506.5864032 |
4.743320465 |
5.32637 |
-7.28205 |
7.54332 |
|
8 |
4.149 |
14.5824995 |
533.2499005 |
533.593 |
533.593 |
4.343319893 |
5.05945 |
-7.4615 |
7.53104 |
|
9 |
4.149 |
14.43480015 |
502.2804724 |
502.623 |
502.623 |
5.099320412 |
5.60228 |
-7.41656 |
7.54227 |
|
10 |
4.149 |
14.74800014 |
566.1753349 |
567.492 |
567.492 |
5.463320732 |
5.96058 |
-7.87423 |
7.53708 |
|
11 |
4.149 |
13.98649979 |
506.2554005 |
506.5864032 |
506.5864032 |
4.743320465 |
5.32637 |
-7.27844 |
7.53794 |
|
12 |
4.149 |
14.5824995 |
533.2499005 |
533.593 |
533.593 |
4.263319969 |
5.05945 |
-7.45935 |
7.47959 |
|
13 |
4.149 |
14.74800014 |
566.1753349 |
567.492 |
567.492 |
5.463320732 |
5.96058 |
-7.87469 |
7.50477 |
|
14 |
4.149 |
13.98649979 |
506.2554005 |
506.5864032 |
506.5864032 |
4.743320465 |
5.32637 |
-7.27989 |
7.48475 |
|
15 |
4.149 |
14.43480015 |
502.2804724 |
502.623 |
502.623 |
5.099320412 |
5.60228 |
-7.41794 |
7.54303 |
|
16 |
4.149 |
14.47049999 |
516.2597369 |
516.606 |
516.606 |
4.217520237 |
4.78923 |
-6.98457 |
7.41852 |
|
17 |
4.149 |
15.24749947 |
594.1702495 |
595.502 |
595.502 |
5.156120777 |
5.58469 |
-7.79803 |
7.41912 |
|
18 |
4.149 |
15.08740044 |
546.2703016 |
546.632 |
546.632 |
4.437420845 |
4.69171 |
-6.99903 |
7.41652 |
|
19 |
4.149 |
14.28419971 |
552.1596848 |
553.465 |
553.465 |
6.086218357 |
5.82578 |
-7.77518 |
7.47903 |
|
20 |
4.149 |
14.77729988 |
520.236893 |
520.656 |
520.656 |
5.692176342 |
5.79707 |
-7.77285 |
7.47775 |
|
21 |
4.149 |
15.24109936 |
534.2525431 |
534.683 |
534.683 |
6.221176147 |
6.13665 |
-8.04249 |
7.47594 |
|
22 |
4.149 |
13.50719929 |
474.2491722 |
474.569 |
474.569 |
5.051320076 |
5.03032 |
-6.9576 |
7.48437 |
|
23 |
4.149 |
13.97099972 |
488.2648223 |
488.596 |
488.596 |
5.550319195 |
5.46748 |
-7.30925 |
7.48664 |
|
24 |
4.149 |
14.12409973 |
504.2597369 |
504.595 |
504.595 |
5.279327393 |
4.9328 |
-7.00997 |
7.50118 |
|
25 |
4.149 |
13.97099972 |
488.2648223 |
488.596 |
488.596 |
5.550319195 |
5.2541 |
-7.15653 |
7.49842 |
|
26 |
4.149 |
14.43480015 |
502.2804724 |
502.623 |
502.623 |
6.079319954 |
5.72377 |
-7.51987 |
7.4889 |
|
27 |
4.149 |
14.11869907 |
519.2342505 |
519.566 |
519.566 |
5.162673473 |
4.92465 |
-7.33855 |
7.21096 |
|
28 |
4.149 |
13.99859905 |
508.2101999 |
509.011 |
509.011 |
5.936218262 |
5.6523 |
-7.65374 |
7.47595 |
|
29 |
4.149 |
14.11869907 |
519.2342505 |
519.566 |
519.566 |
5.162673473 |
4.92465 |
-7.35822 |
7.44963 |
|
30 |
4.149 |
14.12409973 |
504.2597369 |
504.595 |
504.595 |
5.279327393 |
4.9328 |
-7.0175 |
7.43033 |
|
31 |
4.149 |
13.97099972 |
488.2648223 |
488.596 |
488.596 |
5.550319195 |
5.46748 |
-7.31969 |
7.47759 |
|
32 |
4.149 |
13.99859905 |
508.2101999 |
509.011 |
509.011 |
5.936218262 |
5.6523 |
-7.65175 |
7.43716 |
|
33 |
4.149 |
15.18500042 |
528.2961224 |
528.661 |
528.661 |
6.623319149 |
6.26172 |
-8.19125 |
7.47969 |
|
34 |
4.149 |
14.09979916 |
518.2390015 |
518.578 |
518.578 |
5.262735844 |
4.78137 |
-7.11108 |
7.44531 |
|
35 |
4.149 |
15.19519901 |
524.2648223 |
524.629 |
524.629 |
6.225319386 |
6.29714 |
-8.35474 |
7.46446 |
Statistical analysis:
The estimated descriptors for each enzyme inhibitory activity were gathered using a data matrix (D) with a dimension of (n × m). The number of molecules in each data set and the number of computed descriptors for each molecule are denoted by the numbers n and m, respectively. Initially, the descriptors were checked for constant or almost constant values, and those that were discovered were removed from the initial data matrix. Next, the relationship between the activity data and the descriptors was determined. To do the correlation study and identify the primary factors impacting the activity, the statistical tool VALSTAT was utilized.
Model development and validation:
QSAR models yielded multiple linear regression (MLR) analysis. The stepwise selection of variables, which combines forward selection and backward elimination techniques, was used to pick the most relevant subset of descriptors. Regression analysis was performed with the VALSTAT program.
External validation was used to validate the QSAR model. This method is used to calculate the activity of each compound in the test set. The calculated and observed activities were used to construct the cross-validation coefficient q2. One way to gauge a model's stability and predictive accuracy is to look at its cross-validation coefficient, or q2. The square of the cross-validation coefficient (q2) should be at least 0.5 for a reliable model.
RESULT AND DISCUSSION:
Molar Refractivity, Mass, Partition Coefficient, LogP, LogS, Polar Surface Area, Sum of Degree, Sum of Val. Degree, and Wiener Index are among the descriptors employed in this investigation. The descriptors were obtained from the structural characteristics of each compound after the geometry optimization process. The descriptors of the series of pyrazole-benzimidazole compounds were obtained using the semi-empirical PM3 technique. This method can be used to analyze a variety of pyrazole-benzimidazole derivatives because they are organic compounds composed of the atoms C, H, and N. Regression analysis was used in the statistical study to identify the QSAR models and their statistical properties.
Multiple linear regressions and other statistical analysis were performed on every molecule in the training set. Descriptors were selected for the model based on their correlation coefficient; those with an interred correlation coefficient of less than 0.6 were taken into account. Numerous models were generated by multiple linear regression (MLR) analysis. The model's predictive power was evaluated using a variety of statistical measures, such as the correlation coefficient, regression coefficient (r2), Fischer statistical value (F), and standard error. All of these statistical features were computed, according to the VALSTAT.
The first regression analysis was performed on each training molecule, resulting in a regression model. The best QSAR model has a large F, low p-value, r2 and q2 values near 1, and P<0.001. The best QSAR model created using the multiple linear regression (MLR) technique is represented by the following equation:
optimized model no. 1 results are.......
BA= [6.33613(±0.565209)] +Exact [-0.348746( ± 0.185605)] +Mass [-0.169603( ± 0.173082)] +Mol [0.149827(±0.0646368)]
n=34,r=0.451694,r^2=0.204027,r^2adj=0.12443,variance=0.245301,std=0.495279,QF=0.911999, PE=0.0910055, F=2.56325, FIT=0.180592, LOF=11.6695, AIC=0.29865standard Fmax value at 95% confidence=5.58871
Henry’s law Constant, Partition Coefficient, and Mass, Molecular weight, descriptors with r2 = 0.204027 and std = 0.495279 were used for developing Model 1. Std was higher and r2 was lower. Thus, we created Model 2 and 3 by substituting the Mass descriptor for the logP descriptor, and we discovered Model 2 Value a r2 value of 0.192457 and a standard deviation of 0.572264. and Model 3 value is r2 value of 0.17021 and a standard deviation of0.580094.
optimizedmodel no. 2 results are.......
BA= [6.4112(±0.632438)] +Law [0.0885432( ± 0.0949709)] +Exact [-0.347976( ± 0.172289)] +Mol [0.144589(±0.0840339)]
n=35, r=0.438699, r^2=0.192457, r^2adj=0.114308, variance=0.327487, std=0.572264, QF=0.766603, PE=0.0909998, F=2.46269, FIT=0.16791, LOF=15.8626, AIC=0.411999standard Fmax value at 95% confidence=5.53414
optimizedmodel no. 3 results are.......
BA=[6.73489(±0.634665)] +Constant[0.000266736(±0.00219479)] +Exact [-0.248804(±0.16037)] +Mol [0.180689(±0.0785019)]
n=35, r=0.412565, r^2=0.17021, r^2adj=0.0899073, variance=0.336509, std=0.580094, QF=0.711203, PE=0.0935068, F=2.11961, FIT=0.144519, LOF=16.2996, AIC=0.42335standard Fmax value at 95% confidence=5.53414
We looked into creating several models utilizing different descriptors, and we found that Models 1, 2, and 3 had the descriptors Molar Refractivity along with Partition Coefficient, Henary law constant, Mass, and Exact mass. We found that model 1 is better than the other two models, with a r2 value of 0.204027, a standard deviation of 0.495279, and one outlier. MDB and MCF-7 inhibitor activity are positively correlated. The positive correlation of MR indicates that higher molecular weight or bulky group compounds are essential for enhanced MCF-7 cell inhibitory action. An electrophilic group would increase activity, according to the Molar Refractivity negative correlation.Furthermore, a correlation was found in the Partition Coefficient, indicating that less polar groups are more active. Table-3 and Figure-1 show the predicted pIC50 and biological activity values of the training and test sets of series using model-1. Figure-2 show the Residual value (RV= pIC50 – Actual Biological Activity).
Table 3: The Actual and predicted pIC50 values of the training set of series by using model-1
|
S.No |
Compound No. |
Predicted pIC50 |
Actual Biological Activity |
Residual Value |
|
1. |
COMPOUND 2 |
5.52393 |
7.167491087 |
-1.64356 |
|
2. |
COMPOUND 3 |
6.99796 |
5.37675071 |
1.621209 |
|
3. |
COMPOUND 4 |
8.19896 |
7.070581074 |
1.128379 |
|
4. |
COMPOUND 5 |
6.9808 |
7.075720714 |
-0.09492 |
|
5. |
COMPOUND 9a |
7.1358 |
7.259637311 |
-0.12384 |
|
6. |
COMPOUND 9b |
6.89882 |
7.102372909 |
-0.20355 |
|
7. |
COMPOUND 9c |
7.06426 |
7.619788758 |
-0.55553 |
|
8. |
COMPOUND 9d |
7.26196 |
7.397940009 |
-0.13598 |
|
9. |
COMPOUND 9e |
7.00167 |
7.102372909 |
-0.1007 |
|
10. |
COMPOUND 9f |
6.89148 |
7.27572413 |
-0.38424 |
|
11. |
COMPOUND 9g |
7.0117 |
8.698970004 |
-1.68727 |
|
12. |
COMPOUND 9h |
7.29712 |
7.318758763 |
-0.02164 |
|
13. |
COMPOUND 9i |
6.89818 |
6.974694135 |
-0.07651 |
|
14. |
COMPOUND 9j |
7.09358 |
6.821023053 |
0.272557 |
|
15. |
COMPOUND 9k |
6.95579 |
8.301029996 |
-1.34524 |
|
16. |
COMPOUND 10a |
7.35716 |
6.950781977 |
0.406378 |
|
17. |
COMPOUND 10b |
7.08861 |
6.42945706 |
0.659153 |
|
18. |
COMPOUND 10c |
7.4807 |
6.232844134 |
1.247856 |
|
19. |
COMPOUND 11a |
6.73711 |
5.673664139 |
1.063446 |
|
20. |
COMPOUND 11b |
6.81799 |
6.866461092 |
-0.04847 |
|
21. |
COMPOUND 11c |
6.702 |
6.399027104 |
0.302973 |
|
22. |
COMPOUND 11d |
6.93344 |
6.879426069 |
0.054014 |
|
23. |
COMPOUND 11e |
6.80588 |
6.659555885 |
0.146324 |
|
24. |
COMPOUND 11f |
6.91907 |
6.600326279 |
0.318744 |
|
25. |
COMPOUND 11g |
6.80403 |
6.73754891 |
0.066481 |
|
26. |
COMPOUND 11h |
6.62007 |
7.055517328 |
-0.43545 |
|
27. |
COMPOUND 11i |
6.91297 |
6.732828272 |
0.180142 |
|
28. |
COMPOUND 11j |
6.6763 |
6.554395797 |
0.121904 |
|
29. |
COMPOUND 11k |
6.96582 |
6.17327748 |
0.792543 |
|
30. |
COMPOUND 11l |
6.90521 |
6.70333481 |
0.201875 |
|
31. |
COMPOUND 11m |
6.79827 |
6.793174124 |
0.005096 |
|
32. |
COMPOUND 11n |
6.64654 |
6.809668302 |
-0.16313 |
|
33. |
COMPOUND 11o |
6.47422 |
6.882728704 |
-0.40851 |
|
34. |
COMPOUND 11p |
6.89301 |
7.283996656 |
-0.39099 |
|
35. |
COMPOUND 11q |
6.67894 |
6.568636236 |
0.110304 |
Compound 11 was outlier.
Figure 1:Corelation between Experimental IC50 value and Predicted pIC50 value.
Figure 2: Graph of Residul value
CONCLUSION
For the MCF-7 cell inhibitory action of 4-nitroimidazole-piperazinyl tagged 1,2,3-triazoles compounds, we created a QSAR model. It is possible to determine that the MCF-7 inhibitory activity of 4-nitroimidazole-piperazinyl tagged 1,2,3-triazoles derivatives is significantly influenced by the thermodynamic and electrical nature of the substituents. According to the proposed QSAR model, the maximum Molar Refractivity, Partition coefficient, Henary law constant, and molecular weight should be taken into consideration while designing novel compounds for their potential MCF-7 inhibitory action. Novel compounds with potent MCF-7 cell inhibitory action can be further explored using this QSAR approach.
Acknowledgement: The principal of the VNS Group of Institute Faculty of Pharmacy in Bhopal is acknowledged by the authors for providing the facilities needed to carry out this study.
Conflict of Interest: The authors declare no conflict of interest.
Funding Source: The authors received no financial support for this research.
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