Available online on 15.09.2025 at http://jddtonline.info

Journal of Drug Delivery and Therapeutics

Open Access to Pharmaceutical and Medical Research

Copyright  © 2025 The  Author(s): This is an open-access article distributed under the terms of the CC BY-NC 4.0 which permits unrestricted use, distribution, and reproduction in any medium for non-commercial use provided the original author and source are credited

Open Access Full Text Article                                                  Research Article

Cannabis Compounds: Docking and Dynamics Study

Fatiha Bousselham *, Mohammed Mouhcine , Ikram Ghicha , Youness Kadil , Sanae Baghrous , Abdellah Mound , Hasnaa Bazhar, Imane Rahmoune , Houda Filali  

Laboratory of Scientific and Clinical Research in Cancer Pathology, Faculty of Medicine and Pharmacy of Casablanca, Hassan II University of Casablanca, Casablanca, Morocco

Article Info:

__________________________________________________

Article History:

Received 23 June 2025  

Reviewed 10 August 2025  

Accepted 29 August 2025  

Published 15 Sep 2025  

__________________________________________________

Cite this article as: 

Bousselham F, Mouhcine M, Ghicha I, Kadil Y, Baghrous S, Mound A, Bazhar H, Rahmoune I, Filali H, Cannabis Compounds: Docking and Dynamics Study, Journal of Drug Delivery and Therapeutics. 2025; 15(9):83-91  DOI: http://dx.doi.org/10.22270/jddt.v15i9.7371                                        __________________________________________________

*For Correspondence:     

Fatiha Bousselham, Laboratory of Scientific and Clinical Research in Cancer Pathology, Faculty of Medicine and Pharmacy of Casablanca, Hassan II University of Casablanca, Casablanca, Morocco

Abstract

____________________________________________________________________________________________________________

Cannabis molecules exhibit significant therapeutic potential, offering promising prospects in healthcare. This in silico study aims to evaluate the affinity and stability of non-psychotropic cannabis-derived compounds (CBC, CBD, CBG, CBN, and β-Cannabispiranol) with CB1 and CB2 receptors to identify the ligand with the highest interaction potential.

Using MOE (Molecular Operating Environment) for molecular docking and GROMACS for molecular dynamics simulations, the interactions between these ligands and their targets were analyzed. Results reveal that cannabis compounds interact favorably with both CB1 and CB2 receptors, with a clear preference for CB2.

CBG demonstrated the highest affinity with CB2 (-7.9008 kcal/mol), forming two key bonds: an H-arene bond and a hydrogen bond with phenylalanine 183. The CB2-CBG complex exhibited remarkable stability over 8000 ps, with an RMSD of 0.6993 Å. CBD showed the best affinity with CB1 (-7.4857 kcal/mol), forming a hydrogen bond with methionine 363 and an RMSD of 1.6918 Å, also within acceptable limits.

In conclusion, CBG emerges as the most promising ligand due to its stable, reversible interaction and high affinity potential with CB2.

Keywords: Cannabinoids, molecular docking, molecular dynamics, type 1 cannabinoid receptors, type 2 cannabinoid receptors.

 


 

INTRODUCTION

Cannabis sativa is an annual, dioecious flowering plant with characteristic palmate leaves and a distinctive venation pattern. There are three known subspecies of Cannabis: Sativa, Indica, and Ruderalis. Cannabis sativa is the most widespread variety, growing in both tropical and temperate climates1. Cannabis sativa contains 545 chemical compounds, of which 104 are cannabinoids, while the others include flavonoids, terpenes, fatty acids, etc2. The best-characterized cannabinoid constituent is D9-tetrahydrocannabinol (THC), the main psychoactive component of cannabis2, and the plant’s psychotropic effects are attributed to its content of this class of compounds3. Other important non-psychoactive components with several medical functions3 include cannabidiol (CBD), cannabinol (CBN)2 cannabichromène (CBC) cannabigerol (CBG)4, and cannabispirol or β-Cannabispiranol4.

The development of cannabinoids as therapeutic agents and their use in medical applications have been studied due to their antinociceptive, anti-inflammatory, antioxidant, antimicrobial, and anti-biofilm effects5 Anxiolytic, antidepressant, and antipsychotic6. Such properties have the potential to be used in the therapeutic approach of a number of devastating diseases, for example, glaucoma, depression, neuralgia, multiple sclerosis, Alzheimer's disease, as well as the managing of HIV and cancer related symptoms3. They are also being studied for the treatment of acne7, Skin cancer, psoriasis, dermatitis, and scleroderma8, Inflammatory bowel diseases5, Cardiovascular diseases, epilepsy8, For appetite stimulation and obesity risk reduction9

Cannabinoids exert their effects by activating two distinct G protein-coupled receptors, called type 1 (CB1) and type 2 (CB2) cannabinoid receptors10. The CB1 receptor is strongly expressed in the central nervous system (CNS) and along pain pathways 102. In contrast, the CB2 receptor is primarily, but not exclusively, located outside the CNS, with dense expression in peripheral tissues involved in immune functions 102

Molecular docking is a computational study to estimate the most likely configuration and orientation of a molecule, called ligand, that binds it into its target on the basis of their structures11. Its purpose is the modeling the critical interaction between the two molecules, whose three-dimensional structures are already known, in order to estimate the binding affinity12. Molecular docking has been an important tool to realize drug development faster, cheaper and more efficient11. The principle of molecular docking is based on the aforementioned "lock and key" model. Here, the lock is defined as a macromolecular receptor having various architectures, and the key is a small ligand with a defined architecture. If the macromolecular receptor and ligand are compatible enough, with appropriate geometry, it results in electrostatic, hydrogen bonds and hydrophobic interactions. During the docking process, the conformations of the ligand and the nearby amino acid residues are gradually changed, fitting themselves to each other, to generate a proper binding13

The main component of cannabis, THC, strongly activates the CB1 cannabinoid receptor and also modulates the CB2 cannabinoid receptor, but this molecule has psychoactive effects14. The formation of a covalent bond between the ligand and the target is essential for a number of effective drugs15. The objective of this study is to perform molecular docking of non-psychomimetic cannabis-derived compounds, namely CBC, CBD, CBG, CBN, and β-Cannabispiranol, with CB2 and CB1 receptors. This study aims to identify the ligand with the highest interaction potential with the appropriate cannabinoid receptors, as well as to analyze the type of interaction, the nature of the bond, and the stability of this interaction.

METHODOLOGY

  1. Molecular docking using Molecular Operating Environment (MOE).

MOE (Molecular Operating Environment) is a software platform for drug design that combines visualization, modeling, and simulations. This approach is an extremely fast tool, useful for large-scale virtual screening, differentiating molecules that can or cannot interact, and ranking active compounds among them based on their binding affinities16.

To investigate the molecular docking of cannabis sativa compounds  CBC, CBD, CBG, CBN, and β-Cannabispiranol—with human CB1 and CB2 receptors, we used the prediction method with MOE 2022.02 software. The crystallographic structures of the active conformations of CB1 and CB2 were downloaded from the Protein Data Bank (PDB) at (https://www.rcsb.org/) in PDB format. The chemical structures of CBC, CBD, CBG, and CBN were extracted from the Drug Data Bank chemoinformatics library (https://go.drugbank.com/), while β-Cannabispiranol was obtained from the MedChemExpress chemoinformatics library (https://www.medchemexpress.com). Once the active compounds and targets were prepared, molecular docking was initiated by setting 30 poses for the interaction between the ligands and targets, followed by the selection of the five best conformations with the ligands.

 

 

  1. Molecular dynamics (MD)

In this study, we conducted two separate molecular dynamics simulation experiments, focusing primarily on RMSD (Root Mean Square Deviation) trajectory analysis. The CHARMM-modified water model TIP3P was used as the solvent in the simulations, and the protein ends were terminated with “NH3+” and “COO-” groups. The CHARMM36 force field was chosen to model the protein topology in both experiments. The topologies of the ligands, WI5 agonist and cannabigerol, were generated using the SwissParam tool on the SwissADME server. In the first experiment, we simulated the 6PT0 protein in complex with its WI5 agonist. In the second experiment, we formed a complex between the 6PT0 protein and cannabigerol. 6PT0 is a membrane protein of homos sapiens, composed of five chains or molecules (R, A, B, C, E), and interacts with three ligands: WI5, cholesterol and palmitic acid. The ligand of interest is WI5 (formula: C27H26N2O3, WIN 55,212-2), since it interacts with the R chain representing the CB2 receptor17. WIN 55,212-2 is a chemical compound known to produce effects similar to those of cannabinoids, such as tetrahydrocannabinol (THC). It is a potent cannabinoid receptor agonist, and has demonstrated notable efficacy as an analgesic in rat models of neuropathic pain18, so it was chosen as the reference ligand. The RMSD trajectory was our main metric for quantifying structural fluctuations and deviations of the protein and ligands throughout the simulations. All simulations were carried out using GROMACS software, pre-equilibrating the systems under constant temperature and pressure conditions (NVT and NPT). Each simulation was extended over 10 nanoseconds, to capture significant structural changes between the 6PT0 protein and its ligands.

RESULTS

  1. Studies on molecular docking between cannabis molecules CBC, CBD, CBG, CBN, β-Cannabispiranol with CB2 and CB1 receptors.

We started by examining the S-scores (in kcal/mol) and RMSD values of the interactions, as well as identifying the best pose for each ligand. These data are presented in Tables 1 and 2

The S-score refers to the affinity between the ligand and the protein, quantitatively measuring the quality or relevance of a given molecular conformation or interaction, based on predefined specific criteria. The choice of the conformation in which the ligand has the best interaction with the protein depends on the structure with the lowest energy16.

RMSD (Root Mean Square Deviation): The RMSD of the heavy atoms between a predicted pose and the observed pose in the unmodified crystal structure was used as a measure for the accuracy of the prediction, by aligning the two datasets to be compared, for example, two molecular structures, and measuring the distance between each pair of corresponding elements in the two datasets. A smaller RMSD means that the two datasets are more similar or closer to each other in their spatial arrangement.


 

Table 1: RMSD and SCORE results of cannabis molecules studied with CB1 and CB2 receptors.

Compounds bound to CB2

S- score (kcal/mol)

RMSD (Å)

Compounds bound to CB1

S- score (kcal/mol)

RMSD (Å)

CBC

-7.6834

1.5461

CBC

-7.3101

4.5194

CBC

-7.6548

1.4800

CBC

-7.1838

2.0638

CBC

-7.5521

1.3528

CBC

-7.1290

1.6668

CBC

-7.3943

2.8420

CBC

-7.0477

2.5547

CBC

-7.3274

1.5820

CBC

-7.0416

1.7632

CBD

-7.6316

1.0795

CBD

-7.4857

1.6918

CBD

-7.4353

1.2913

CBD

-7.1923

1.4054

CBD

-7.3894

2.1734

CBD

-7.1497

1.6111

CBD

-7.2864

1.1970

CBD

-6.9697

1.6240

CBD

-7.2566

1.2395

CBD

-6.9621

1.4475

CBG

-7.9008

0.6993

CBG

-7.3121

2.6232

CBG

-7.7416

1.7020

CBG

-7.2497

0.8958

CBG

-7.7019

2.5419

CBG

-7.2153

1.1299

CBG

-7.6146

1.4176

CBG

-7.1695

1.1595

CBG

-7.5950

2.4207

CBG

-7.1657

1.3015

CBN

-7.3548

1.0219

CBN

-7.2195

0.9244

CBN

-7.2431

1.5247

CBN

-7.1483

2.3861

CBN

-7.0169

1.0699

CBN

-6.8134

2.8798

CBN

-7.0122

1.3036

CBN

-6.7647

2.3540

CBN

-6.9448

2.0753

CBN

-6.6538

1.5567

β-Cannabispiranol

-6.2986

0.6790

β-Cannabispiranol

-6.5163

0.9972

β-Cannabispiranol

-6.2659

1.3951

β-Cannabispiranol

-6.3373

1.6292

β-Cannabispiranol

-6.2565

0.5478

β-Cannabispiranol

-6.0619

1.3440

β-Cannabispiranol

-6.2418

1.5612

β-Cannabispiranol

-6.0342

1.1029

β-Cannabispiranol

-6.2107

1.3157

β-Cannabispiranol

-6.0320

0.9568

 

Table 2: Results of the Best RMSD and SCORE for CB1 and CB2 Receptors with the Studied Ligands.

Compounds bound with CB2

S- score (kcal/mol)     

RMSD (Å)

Compounds bound with CB1

S- score (kcal/mol)

RMSD (Å)

WI5 

-9.0346 

2.2461

KCA 

-8.0485

1.7749

CBC 

-7.6834

1.5461

CBC  

-7.3101

4.5194

CBD 

-7.6316

1.0795

CBD 

-7.4857

1.6918

CBG 

-7.9008

0.6993

CBG 

-7.3121

2.6232

CBN 

-7.3548

1.0219

CBN 

-7.2195

0.9244

β-Cannabispiranol 

-6.2986

0.6790

β-Cannabispiranol

-6.5163

0.9972 

 

 

1. 1 Study of the molecular docking interactions.  

1.2 Study of the molecular docking interactions between the cannabinoid receptor type 2 and the reference ligand WI5. 

This figure highlights the molecular interactions between the reference ligand WI5 and the key residues of the active site of the cannabinoid receptor type 2 (CB2).  

imageimage

Figure 1: Interactions of the reference ligand WI5 in the active site of the CB2 receptor.

 

1.3 The study of molecular docking interactions between the type 2 cannabinoid receptor and the cannabigerol ligand. 

This figure highlights the molecular interactions between the CBG ligand and key residues of the active site of the type 2 cannabinoid receptor (CB2).  

imageimage

Figure 2: The interactions of the CBG ligand in the active site of the CB2 receptor.

 

1.4 The study of molecular docking interactions between the cannabinoid receptor type 1 and the reference ligand KCA.

This figure highlights the molecular interactions between the reference ligand KCA and the key residues of the active site of the cannabinoid type 1 receptor (CB1).

imageimage

Figure 3: The interactions of ligand KCA in the active site of the CB1 receptor.

 

1.5 Study of Molecular Docking Interactions Between the Type 1 Cannabinoid Receptor and the Ligand Cannabidiol:

This figure highlights the molecular interactions between the ligand CBD and key residues within the active site of the type 1 cannabinoid receptor (CB1).  

imageimage

Figure 4: The interactions of ligand CBD in the active site of the CB1 receptor.


 

2.            Molecular dynamics

Molecular dynamics (MD) simulation is an essential technique for studies involving in silico drug discovery19, including the longest simulations ever carried out, has been widely used for prediction. DM simulations are a mature technique that can be used effectively to understand macromolecular structure-function relationships. One of the most practical applications of the molecular recognition concept concerns docking strategies, whether for small molecules or proteins. Understanding how a ligand, usually a substrate or regulator, binds to its macromolecular counterpart is a key issue in understanding function itself, and forms the basis of structural drug design. The recognition process is by nature dynamic20

The root-mean-square deviation (RMSD) of the whole system and of each residue respectively were calculated from the trajectories generated from the production stage19.


 

image

Figure 5  RMSD analysis for MD simulations for CB2 and CBG (green) and the co-crystallized reference CB2 and WI5 (red).


 

DISCUSSION

The results of molecular docking performed using the MOE software provide valuable insights into the affinity of ligands for targets and key molecular-level interactions. According to Table 1, Cannabis sativa molecules CBC, CBD, CBG, and CBN show a preference for interacting with the CB2 receptor over CB1, as suggested by the more negative scores obtained when interacting with CB2 (CBC = -7.6834 Kcal/mol, CBD = -7.6316 Kcal/mol, CBG = -7.9008 Kcal/mol, CBN = -7.3548 Kcal/mol, β-Cannabispiranol = -6.2986 Kcal/mol) compared to CB1 (CBC = -7.3101 Kcal/mol, CBD = -7.4857 Kcal/mol, CBG = -7.3121 Kcal/mol, CBN = -7.2195 Kcal/mol, β-Cannabispiranol = -6.5163 Kcal/mol). Additionally, the RMSD is lower in the interaction with CB2. In contrast, β-Cannabispiranol shows a preference for interacting with CB1 over CB2 (see Table 1).

The molecule with strongest affinity to CB2 receptor is CBG. It gave the best docking energy score, to "-7.9008 kcal/mol" (Table 2). A more negative score indicates a more stable molecular binding21. Moreover, CBG has an RMSD value less than 2, low distance between CBG and the reference ligand WI5. By comparing the affinity score to CBG (-7.9008 kcal/mol) and the corresponding co-crystallized ligand WI5 (-9.0346 kcal/mol) we find that CBG has a slightly lower affinity than WI5, although the difference is still in an acceptable scenario. CBG produced an interaction between CB2 with an affinity of -7.9008 kcal/mol and a distance of 0.6993 Â. Luciano De Petrocellis et al. Tested 11 cannabis derivatives against TRPV1, TRPV2, TRPM8 and TRPA1 targets and identified CBG and THC as the most potent antagonists towards TRPM8 (Transient Receptor Potential Melastatin 8), thereby affecting pain modulations22. Therefore, the CBG molecule is effective not only to the CB2 receptor, but also to other targets.

The molecule with the highest binding affinity to CB1 receptor is CBD (Table 2). Achieving the highest docking energy score (-7.4857 kcal/mol) representing the most stable docking with the CB1 receptor. Furthermore, CBD shows an RMSD value <2, specifically 1.6918 Å (Table 2), indicating high binding affinity towards CB1. Comparing the affinity score obtained for CBD (-7.4857 kcal/mol) with that of the co-crystallized ligand (reference ligand) KCA (-7.5140 kcal/mol) (Table 2), we observe that CBD has an affinity equal to that of KCA. CBD produced an interaction on CB2 with a binding energy of -7.4857 kcal/mol and a distance of 1.6918 Å.

The RMSD of the co-crystallized reference ligand WI5, determined by the MOE software, reflects the conformation of the position on the reference ligand molecule at the interaction site with the CB2 receptor, and it is 2.2461 Å (Table 2). The tested ligand CBG (highest affinity for CB2), with the lowest RMSD value (Table 1), is considered. It is interesting to compare the RMSD of the atoms of the tested ligand and reference ligand CBG, with respect to the conformation of the reference ligand WI5. The value of 0.6993 Å indicates the average deviation of the atomic positions of the CBG ligand compared to the conformation of the reference ligand WI5 when bound to the CB2 receptor. An RMSD below 2 and close to 0 suggests that the tested ligand CBG has a better alignment or better fit with the reference conformation, which could indicate a stronger affinity for the CB2 receptor23.  

The RMSD of the reference ligand KCA with the CB1 receptor, according to the MOE software, has a value of 1.7749 Å (Table 2). When we examine the tested ligand CBD, which shows the highest affinity for CB1, its RMSD is 1.6918 Å (Table 2). This RMSD value below 2 suggests that CBD has a better alignment or a better fit with the conformation of the co-crystallized reference ligand23, This could indicate a good affinity for the CB1 receptor. Luciano De Petrocellis et al. tested 11 cannabis derivatives on TRPV1, TRPV2, TRPM8, and TRPA1 (Transient Receptor Potential Ankyrin 1) targets, and they found that CBC, CBD, and CBN were powerful desensitizers of rat TRPA1, which reduces the sensation of pain22, Which highlights that CBG exerts significant effects on several key therapeutic targets.

The activation of CB1 and CB2 receptors by Cannabis sativa and its derivatives, cannabinoids, has shown beneficial effects in several medical fields. These receptors, integrated into the endocannabinoid system, are targeted to treat various conditions 2425

To find among the screened cannabis molecules, the one with the highest potential for interaction with the cannabinoid receptors CB1 and CB2, it seemed prudent to study the interaction mechanisms first established by the reference ligand WI5 (C27H26N2O3), whose score is -9.0346 kcal/mol and RMSD is 2.2461 Å. The visualization of this compound's interactions within the active site of CB2 was carried out using the MOE software. It is observed that WI5 forms a bond with CB2 (Figure 1), and a hydrogen bond interaction is established between the NH2 group of the WI5 ligand and the Threonine 114 residue of CB2. The amino acid residues Val 261, Ser 285, Leu 182, Phe 183, Phe 281, Pro 184, Met 265, Ile 101, Val 113, Thr 114, Tyr 190, Ile 186, Leu 191, Trp 194, The 87, Phe 94, Phe 91, and Ser 90 participate in Van der Waals interactions with the CB2 compound (Figure 1).

The interaction of the CBG molecule with the active site of CB2 gives a score of -7.9008 kcal/mol and an RMSD of 0.6993 Å. However, this ligand forms two bonds (Figure 2). The first is an H-arene interaction formed between the benzene ring of the CBG ligand and the phenylalanine 183 amino acid residue of the CB2 receptor, and the second interaction is a hydrogen bond between the carbon of the CBG ligand and the phenylalanine 183 residue of the CB2 receptor (Figure 2). The amino acid residues Met 265, Leu 182, Ser 285, Val 261, Lys 278, Phe 281, Ala 282, Phe 91, His 95, Thr 114, Val 113, Trp 194, Leu 191, Ile 186, and Tyr 190 participate in Van der Waals interactions with the CB2 compound. 

The interaction of the reference molecule KCA (chemical formula: C22H24FN3O3) with the active site of CB1. This compound shows a binding energy score of -8.0485 kcal/mol and an RMSD of 1.7749 Å. Using the MOE software, we visualized the interactions of this compound within the active site of CB1. It is observed that KCA forms two bonds with CB1 (Figure 3). The first is an arene-H interaction between Histidine 178 of CB1 and the carbon of the KCA ligand, and the second is an arene-arene interaction between the Tryptophan 279 residue of CB1 and the benzene ring of KCA. The amino acid residues Lys 192, Ser 173, Phe 174, Leu 193, Phe 177, Phe 170, Phe 268, Leu 276, Val 196, Met 363, Tyr 275, Phe 200, Phe 379, Thr 197, and Ser 383 participate in Van der Waals interactions with the CB2 compound (Figure 3).

The interaction of the CBD ligand with the active site of CB1 gives a score of -7.4857 kcal/mol and an RMSD value of 1.6918 Å. However, this ligand forms a hydrogen-donor bond between the hydroxyl (OH) group of the CBD ligand and the methionine 363 residue of the CB2 receptor (Figure 4). The residues Leu 276, Asp 272, Phe 200, Leu 359, Phe 379, Val 196, Cys 386, Ser 383, Phe 170, Thr 197, Phe 268, Trp 279, Ile 271, Leu 193, and Tyr 275 participate in Van der Waals interactions with the CB2 compound (Figure 4). The article by De Petrocellis et al. (2011) studies the effects of cannabinoids, including cannabidiol (CBD) and other cannabis extracts, on TRP (transient receptor potential) channels and endocannabinoid metabolic enzymes. Regarding the FAAH (Fatty Acid Amide Hydrolase) enzyme, responsible for the degradation of anandamide (an endocannabinoid), CBD was found to be a potent inhibitor. This means that CBD reduces FAAH activity, leading to an increase in anandamide levels, which can have anti-inflammatory and analgesic effects22, Which reports that CBD has potent effects on several therapeutic targets.

The CBG molecule showed the best affinity score with the CB2 receptor, with a value of -7.9008 kcal/mol. These results justify the continuation of the study by focusing on the most promising ligand, CBG, and its potential target, the CB2 receptor. To analyze in more detail the proposed binding mode of CBG, various GROMACS scripts were used to calculate the hydrogen bond distances formed between CBG and the CB2 receptor and CB2-WI5.

Two MD simulation experiments were carried out on CB2-WI5 and CB2-CBG (Figure 5). At the start of the molecular dynamics simulation of the CB2-CBG and CB2-WI5 complexes (ref) from 0 to 1000 (Ps), the RMSD characterized by fluctuations, may be the result of the equilibration process, to reach a thermodynamic equilibrium state, so may be due to initial adjustments of atoms to reach stable configurations, so the simulation requires more time to reach a stable state. 

From 1000ps to 2000ps, the RMSD of the stimulated CB2-CBG complex is lower and stable than that of the CB2-WI5 ref complex, which continues to fluctuate to reach maximum fluctuation (Figure 5). This means that the simulated complex has reached its thermodynamic equilibrium state and is in a stable conformation, while the ref complex has not yet found its stable conformation with its ligand.

From 2000ps to 8000ps, the RMSD of the stimulated CB2-CBG complex and the reference CB2-WI5 complex is stable; a low RMSD indicates high structural stability 2326, indicating that the conformation of the system during stimulation is close to the reference structure. This means that the system is well balanced and does not undergo drastic changes in structure, a prolonged period of stability suggests that the system is well balanced and retains a stable structure for a prolonged period, this may indicate that the simulation conditions are appropriate, the system is in a state of dynamic equilibrium, so it can be said that in this period both complexes retain a relatively constant molecular structure, balanced throughout this period, as well as there are no major changes in structure. This reinforces confidence in the simulation results. A stable RMSD over a long period may indicate that the simulated system has reached a state of thermodynamic equilibrium, indicating that the interactions between the atoms in the system are balanced and that the molecular structure retains relative stability throughout the simulation26. The CB2 protein and CBG ligand in this period interact coherently and their conformation is maintained within an acceptable range compared with the reference structure. 

From 8,000Ps to 10,000Ps the detection of fluctuations in the CB2-CBG reference complex could indicate that the binding becomes less stable, the CBG ligand progressively detaches from CB2, suggesting a reversibility of CB2-CBG binding, so CBG interacts with the CB2 target, exerts its pharmacological effect, once this effect is achieved, it dissociates from the target to be eliminated from the body. On the other hand, the RMSD of the CB2-WI5 reference complex is more or less stable, with a very gradual increase, so the ligand is still bound to the receptor. WI5, the synthetic form of cannabinoid, seems to have a covalent bond with the CB2 target, meaning that the bond is stronger and harder to break. The bond between CB2-WI5 is a time-limited reversible bond, the speed and time of ligand-target dissociation used by the reference complex being longer than that of the test complex, so the binding kinetics of the reference CB2-WI5 complex are slower than those of the test CB2-CBG complex, so it can be said that synthetic cannabis WI5 seems to have more side effects than natural cannabis CBG. 

CONCLUSION:

The study was undertaken for molecular docking of non-psychomimetic cannabinoid compounds - CBC, CBD, CBG, CBN, and β-Cannabispiranol-with the CB2 and the CB1 receptors to find out which ligand can interact most strongly and study the type, nature, and stability of these interactions.

They concluded from these results that...

CBG has a strong affinity for the CB2 receptor, with a docking score of -7.9008 kcal/mol and a very low RMSD value of 0.6993 Å, showing the formation of stable interaction with the receptor, well aligned with that of the reference ligand WI5.

CBD shows the highest binding affinity towards CB1 receptor with a docking score of -7.4857 kcal/mol and an RMSD value of 1.6918 Å, validating the formation of a stable interaction comparable with reference ligand KCA.

Other compounds (i.e., CBC, CBN, β-Cannabispiranol) show moderate affinities and less stable binding profiles with each profile showing its own preference between CB1 or CB2.

Molecular dynamics simulations performed through GROMACS support the view of the stability of CB2-CBG and CB1-CBD complexes over relatively long times, pointing at thermodynamic equilibrium and structural coherency of the interactions. 

Such results shall prove the first probe theorizing that certain non-psychomim. 

Competing interestsNo conflict of interest. 

Author Contributions: All authors have equal contributions in the preparation of the manuscript and compilation.

Source of Support: Nil

Funding: The authors declared that this study has received no financial support.

Informed Consent Statement: Not applicable. 

Data Availability Statement: The data presented in this study are available on request from the corresponding author. 

Ethical approval: Not applicable.

REFERENCES:

1. Kopustinskiene DM, Masteikova R, Lazauskas R, Bernatoniene J. Cannabis sativa L. Bioactive Compounds and Their Protective Role in Oxidative Stress and Inflammation. Antioxidants. avr 2022;11(4):660. https://doi.org/10.3390/antiox11040660 PMid:35453344 PMCid:PMC9030479

2. Beaulieu P, Boulanger A, Desroches J, Clark AJ. Medical cannabis: considerations for the anesthesiologist and pain physician. Can J Anesth/J Can Anesth. mai 2016;63(5):608‑24. https://doi.org/10.1007/s12630-016-0598-x PMid:26850063

3. ElSohly MA, Radwan MM, Gul W, Chandra S, Galal A. Phytochemistry of Cannabis sativa L. In: Kinghorn AD, Falk H, Gibbons S, Kobayashi J, éditeurs. Phytocannabinoids: Unraveling the Complex Chemistry and Pharmacology of Cannabis sativa [Internet]. Cham: Springer International Publishing; 2017 [cité 10 nov 2023]. p. 1‑36. (la série de livres Progress in the Chemistry of Organic Natural Products). https://doi.org/10.1007/978-3-319-45541-9_1 PMid:28120229

4. Kazemi F, Karimi I, Yousofvand N. Molecular docking study of lignanamides from Cannabis sativa against P-glycoprotein. In Silico Pharmacol. 3 janv 2021;9(1):6. https://doi.org/10.1007/s40203-020-00066-7 PMid:33442533 PMCid:PMC7779379

5. Aqawi M, Sionov RV, Friedman M, Steinberg D. The Antibacterial Effect of Cannabigerol toward Streptococcus mutans Is Influenced by the Autoinducers 21-CSP and AI-2. Biomedicines. mars 2023;11(3):668. https://doi.org/10.3390/biomedicines11030668 PMid:36979647 PMCid:PMC10045765

6. Saad N, Raviv D, Mizrachi Zer-Aviv T, Akirav I. Cannabidiol Modulates Emotional Function and Brain-Derived Neurotrophic Factor Expression in Middle-Aged Female Rats Exposed to Social Isolation. International Journal of Molecular Sciences. janv 2023;24(20):15492. https://doi.org/10.3390/ijms242015492 PMid:37895171 PMCid:PMC10607116

7. Cohen G, Jakus J, Baroud S, Gvirtz R, Rozenblat S. Development of an Effective Acne Treatment Based on CBD and Herbal Extracts: Preliminary In Vitro, Ex Vivo, and Clinical Evaluation. Evidence-Based Complementary and Alternative Medicine. 17 avr 2023;2023:e4474255. https://doi.org/10.1155/2023/4474255 PMid:37101713 PMCid:PMC10125735

8. Fleisher-Berkovich S, Ventura Y, Amoyal M, Dahan A, Feinshtein V, Alfahel L, et al. Therapeutic Potential of Phytocannabinoid Cannabigerol for Multiple Sclerosis: Modulation of Microglial Activation In Vitro and In Vivo. Biomolecules. févr 2023;13(2):376. https://doi.org/10.3390/biom13020376 PMid:36830745 PMCid:PMC9953076

9. Eitan A, Gover O, Sulimani L, Meiri D, Schwartz B. The Effect of Orally Administered Δ9-Tetrahydrocannabinol (THC) and Cannabidiol (CBD) on Obesity Parameters in Mice. International Journal of Molecular Sciences. janv 2023;24(18):13797. https://doi.org/10.3390/ijms241813797 PMid:37762099 PMCid:PMC10530777

10. Venance L, Maldonado R, Manzoni O. Le système endocannabinoïde central. Med Sci (Paris). 1 janv 2004;20(1):45‑53. https://doi.org/10.1051/medsci/200420145 PMid:14770363

11. Muhammed MT, Aki-Yalcin E. Molecular Docking: Principles, Advances, and Its Applications in Drug Discovery. Bentham Science Publishers; 2024. https://www.ingentaconnect.com/content/ben/lddd/2024/00000021/00000003/art00007 

12. Morris GM, Lim-Wilby M. Molecular Docking. In: Kukol A, éditeur. Molecular Modeling of Proteins [Internet]. Totowa, NJ: Humana Press; 2008 [cité 31 janv 2024]. p. 365‑82. (Methods Molecular BiologyTM). https://doi.org/10.1007/978-1-59745-177-2_19 PMid:18446297

13. TONG JB, ZHANG X, LUO D, BIAN S. Molecular design, molecular docking and ADMET study of cyclic sulfonamide derivatives as SARS-CoV-2 inhibitors. Chinese Journal of Analytical Chemistry. déc 2021;49(12):63‑73. https://doi.org/10.1016/j.cjac.2021.09.006 PMCid:PMC8479971

14. Gertsch J, Pertwee RG, Di Marzo V. Phytocannabinoids beyond the Cannabis plant - do they exist? British J Pharmacology. juin 2010;160(3):523‑9. https://doi.org/10.1111/j.1476-5381.2010.00745.x PMid:20590562 PMCid:PMC2931553

15. Scholz C, Knorr S, Hamacher K, Schmidt B. DOCKTITE-A Highly Versatile Step-by-Step Workflow for Covalent Docking and Virtual Screening in the Molecular Operating Environment. J Chem Inf Model. 23 févr 2015;55(2):398‑406. https://doi.org/10.1021/ci500681r PMid:25541749

16. Scholz C, Knorr S, Hamacher K, Schmidt B. DOCKTITE-A Highly Versatile Step-by-Step Workflow for Covalent Docking and Virtual Screening in the Molecular Operating Environment. J Chem Inf Model. 23 févr 2015;55(2):398‑406. https://doi.org/10.1021/ci500681r PMid:25541749

17. Bank RPD. RCSB PDB - 6PT0: Cryo-EM structure of human cannabinoid receptor 2-Gi protein in complex with agonist WIN 55,212-2. https://www.rcsb.org/structure/6pt0 

18. Bank RPD. RCSB PDB - WI5 Ligand Summary Page https://www.rcsb.org/ligand/WI5 

19. El Hassab MA, Eldehna WM, Al-Rashood ST, Alharbi A, Eskandrani RO, Alkahtani HM, et al. Multi-stage structure-based virtual screening approach towards identification of potential SARS-CoV-2 NSP13 helicase inhibitors. J Enzyme Inhib Med Chem. 2022;37(1):563‑72. https://doi.org/10.1080/14756366.2021.2022659 PMid:35012384 PMCid:PMC8757614

20. Hospital A, Goñi JR, Orozco M, Gelpí JL. Molecular dynamics simulations: advances and applications. Advances and Applications in Bioinformatics and Chemistry. 19 nov 2015;8:37‑47. https://doi.org/10.2147/AABC.S70333 PMid:26604800 PMCid:PMC4655909

21. Shamsara J. Correlation between Virtual Screening Performance and Binding Site Descriptors of Protein Targets. Int J Med Chem. 11 janv 2018;2018:3829307. https://doi.org/10.1155/2018/3829307 PMid:29545955 PMCid:PMC5818911

22. De Petrocellis L, Ligresti A, Moriello AS, Allarà M, Bisogno T, Petrosino S, et al. Effects of cannabinoids and cannabinoid-enriched Cannabis extracts on TRP channels and endocannabinoid metabolic enzymes. Br J Pharmacol. août 2011;163(7):1479‑94. https://doi.org/10.1111/j.1476-5381.2010.01166.x PMid:21175579 PMCid:PMC3165957

23. Gu J, Yang X, Kang L, Wu J, Wang X. MoDock: A multi-objective strategy improves the accuracy for molecular docking. Algorithms for Molecular Biology. 18 févr 2015;10(1):8. https://doi.org/10.1186/s13015-015-0034-8 PMid:25705248 PMCid:PMC4336518

24. Goutopoulos A, Makriyannis A. From cannabis to cannabinergics: new therapeutic opportunities. 2002; https://doi.org/10.1201/9780203913277.ch4 PMCid:PMC193595

25. Fabresse N, Becam J, Carrara L, Descoeur J, Di Mario M, Drevin G, et al. Cannabinoïdes et thérapeutique. Toxicologie Analytique et Clinique. sept 2019;31(3):153‑72. https://doi.org/10.1016/j.toxac.2019.06.002

26. López-Camacho E, García-Godoy M, García-Nieto J, Nebro A, Aldana Montes J. A New Multi-objective Approach for Molecular Docking Based on RMSD and Binding Energy. 2016. 65 p. https://doi.org/10.1007/978-3-319-38827-4_6